Cheminformatics
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How to Use Skeletal Editing in Drug Discovery: Key Benefits & Applications
Drug discovery is a complex and resource-intensive process that involves synthesizing new compounds, often using well-established chemical reactions. While these methods have…
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Learning Reaction SMARTS: A Practical Guide to Reaction-Based Patterns
Introduction In this tutorial, we’ll dive into using Reaction SMARTS for defining chemical transformations in cheminformatics. It is a powerful tool for…
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Taming the Chaos: Cleaning Data for Reliable ADMET Models
Building machine learning models for ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) predictions puts you on the front lines of drug discovery.…
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How to Build Virtual Chemical Libraries with Fragment Analogues: ChemX
Introduction I want to introduce you to ChemX, a Python-based program I developed during a hackathon in 2019. You can use it…
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How to Scrape FDA Drug Approval Data with Python
Personal Update: Before we embark on today’s tutorial, I wanted to share a personal update with you that sheds light on my…
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How to Highlight Molecular Substructures: Celebrating Commonalities and Differences
Introduction Today, we will dive into molecular substructure highlighting with RDKit – a powerful technique that illuminates the hidden intricacies within molecular…
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How to Plot Bar Charts with Chemical Structures
In this tutorial, I will show how to generate bar chats with chemical structures using python and rdkit. I am adopting the…
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How to Do Reaction-Based Molecular Transforms Using RDKit and Python
In this tutorial, I will show how to generate reaction-based molecules with python code tutorials. I previously developed PKS Enumerator and SIME…
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How to Merge Multiple Datasets with Pandas and Python – Part 1
Today’s tutorial is on how to merge multiple datasets using the Pandas library in python. We will add new columns based on…
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How to Box Plot with Python
This blog post is for readers as well as myself. In this tutorial, I will show how to make different types of…